Paper: arXiv 2602.06394
Authors: Arvid E. Gollwitzer, Paridhi Latawa, David de Gruijl, Deepak A. Subramanian, Adrián Noriega de la Colina
Abstract
Current tokenization methods process sequential data without accounting for signal quality, limiting their effectiveness on noisy real-world corpora. We present QA-Token (Quality-Aware Tokenization), which incorporates data reliability directly into vocabulary construction. We make three key contributions: (i) a bilevel optimization formulation that jointly optimizes vocabulary construction and downstream performance, (ii) a reinforcement learning approach that learns merge policies through quality-aware rewards with convergence guarantees, and (iii) an adaptive parameter learning mechanism via Gumbel-Softmax relaxation for end-to-end optimization. Our experimental evaluation demonstrates consistent improvements: genomics (6.7 percentage point F1 gain in variant calling over BPE), finance (30% Sharpe ratio improvement). At foundation scale, we tokenize a pretraining corpus comprising 1.7 trillion base-pairs and achieve state-of-the-art pathogen detection (94.53 MCC) while reducing token count by 15%. We unlock noisy real-world corpora, spanning petabases of genomic sequences and terabytes of financial time series, for foundation model training with zero inference overhead.
Complexity vs Empirical Score
- Math Complexity: 8.5/10
- Empirical Rigor: 8.0/10
- Quadrant: Holy Grail — high math complexity, high empirical rigor
Why this score: This paper presents a novel approach (QA-Token) to tokenizing noisy sequential datasets, supported by substantial theoretical rigor including bilevel optimization formulations, RL convergence proofs, and Gumbel-Softmax relaxations. The empirical assessment spans large-scale genomic datasets and multi-dimensional financial time series, demonstrating significant real-world quantitative improvements such as a 30% boost in Sharpe ratios.
Research Flowchart
flowchart TD
A[Goal: Tokenize Noisy Real-World Corpora<br>for Foundation Model Pre-Training] --> B[Data Inputs: Genomic Sequences<br>1.7T Base-Pairs & Financial Time Series]
B --> C[QA-Token Methodology]
C --> D[Bilevel Optimization & RL Policy<br>with Quality-Aware Rewards]
C --> E[Adaptive Parameter Learning via<br>Gumbel-Softmax Relaxation]
D & E --> F[Outcomes & Performance Gains]
F --> G[Genomics: +6.7 F1 Variant Calling,<br>94.53 MCC Pathogen Detection, -15% Tokens]
F --> H[Finance: +30% Sharpe Ratio Improvement<br>with Zero Inference Overhead]
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- Beamforming Optimization for Intelligent Reflecting Surface-Aided SWIPT IoT Networks Relying on Discrete Phase Shifts (2021) — link
- A Differentiable Relaxation of Graph Segmentation and Alignment for AMR Parsing (2020) — link
- A practical guide to multi-objective reinforcement learning and planning (2021) — link
- A Decomposition Approach for Stochastic Shortest-Path Network Interdiction with Goal Threshold (2019) — link
- Efficient Transformers with Dynamic Token Pooling (2022) — link
- Optimizing for aggressive-style strategies in Flesh and Blood is NP-hard (2025) — link
- Mitigating Gender Bias for Neural Dialogue Generation with Adversarial Learning (2019) — link
- Investigating data quality issues in Data Streams by evaluating the effects of Label and Feature Noise (2025) — link
- The subset sum game revisited (2021) — link
- Relation Learning on Social Networks with Multi-Modal Graph Edge Variational Autoencoders (2020) — link
- A Screening Framework for Data Quality Estimation in Manufacturing (2024) — link
- Competitive Equilibria in Combinatorial Exchanges with Financially Constrained Buyers: Computational Hardness and Algorithmic Solutions (2018)
- Effective Unsupervised Domain Adaptation with Adversarially Trained Language Models (2019) — link
- A mixed-integer approximation of robust optimization problems with mixed-integer adjustments (2023) — link
- Functional Homotopy: Smoothing Discrete Optimization via Continuous Parameters for LLM Jailbreak Attacks (2024) — link
- Model-based Reinforcement Learning: A Survey (2023) — link
- Deep reinforcement learning-based methods for resource scheduling in cloud computing: a review and future directions (2024) — link
- Digital Twin-Driven Cyber-Physical System for Autonomously Controlling of Micro Punching System (2018) — link
- A Learning-Based Multipopulation Evolutionary Optimization for Flexible Job Shop Scheduling Problem With Finite Transportation Resources (2023) — link
- Hardness of Braided Quantum Circuit Optimization in the Surface Code (2023) — link
- Quasi-quantum states and the quasi-quantum PCP theorem (2024) — link
- RMLM: A Flexible Defense Framework for Proactively Mitigating Word-level Adversarial Attacks (2022) — link
- WRGAN: Improvement of RelGAN with Wasserstein Loss for Text Generation (2021) — link
- Deep Reinforcement Learning for Resource Management on Network Slicing: A Survey (2022) — link
- Approximate Optimum Curbside Utilisation for Pick-Up and Drop-Off (PUDO) and Parking Demands Using Reinforcement Learning (2022) — link
- Beyond Discrete Selection: Continuous Embedding Space Optimization for Generative Feature Selection (2023) — link
- On the Comparison between Multi-modal and Single-modal Contrastive Learning (2024) — link
- A study on relationship between prediction uncertainty and robustness to noisy data (2023) — link
- When Data Quality Issues Collide: A Large-Scale Empirical Study of Co-Occurring Data Quality Issues in Software Defect Prediction (2025) — link
- Real-Time Trading System Based on Selections of Potentially Profitable, Uncorrelated, and Balanced Stocks by NP-Hard Combinatorial Optimization (2023) — link
- A survey of multi-agent deep reinforcement learning with communication (2024) — link
- Noise-Aware Training of Layout-Aware Language Models (2024) — link
- Meta-Heuristic Approaches to NP-Hard Resource Allocation in Civil Engineering: DE vs GA (2024) — link
- A NOVEL DISCRETE RAT SWARM OPTIMIZATION ALGORITHM FOR THE QUADRATIC ASSIGNMENT PROBLEM (2023) — link
- Generative Semantic Communications With Foundation Models: Perception-Error Analysis and Semantic-Aware Power Allocation (2024) — link
- A Discrete Chimp Optimization Algorithm for Minimizing Tardy/Lost Penalties on a Single Machine Scheduling Problem (2021) — link
- A neighborhood comprehensive learning particle swarm optimization for the vehicle routing problem with time windows (2024) — link
- Antenna Allocation and Pricing inVirtualized Massive MIMO Networks via Stackelberg Game (2018) — link
- StablePT: Towards Stable Prompting for Few-shot Learning via Input Separation (2024) — link
- A survey on deep reinforcement learning for audio-based applications (2022) — link
- Quality-Aware Autonomous Navigation with Dynamic Path Cost for Vision-Based Mapping toward Drone Landing (2023) — link
- Short-Packet Communications in Multihop Networks With WET: Performance Analysis and Deep Learning-Aided Optimization (2022) — link
- An Extended Flexible Job Shop Scheduling Model for Flight Deck Scheduling with Priority, Parallel Operations, and Sequence Flexibility (2016) — link
- Classifying Approximation Algorithms: Understanding the APX Complexity Class (2021)
- Detecting and Rectifying Noisy Labels: A Similarity-based Approach (2025) — link
- Hardness Amplification of Optimization Problems (2019) — link
- Multitype Integer Monoid Optimization and Applications (2019)
- The Overlooked Key to AI Success: Why Clean, Reliable Data Outperforms Bigger Models (2025) — link
- Evolution of Non-Terrestrial Networks From 5G to 6G: A Survey (2021) — link
- Quality-Aware Bag of Modulation Spectrum Features for Robust Speech Emotion Recognition (2022) — link
- Robust and Probabilistic Failure-Aware Placement (2016) — link
- Model-Free Quantum Control with Reinforcement Learning (2022) — link
- Perfect Phylogenies via Branchings in Acyclic Digraphs and a Generalization of Dilworths Theorem (2017) — link
- Applications of reinforcement learning in energy systems (2020) — link
- Simulation of an Analogue Circuit Solving NP-Hard Optimization Problems (2019) — link
- Near-optimal discrete optimization for experimental design: a regret minimization approach (2017) — link
- Multi-agent deep reinforcement learning: a survey (2021) — link
- On Conflict-Free Cuts: Algorithms and Complexity (2023) — link
- Graph Invariant Learning with Subgraph Co-mixup for Out-of-Distribution Generalization (2024) — link
- SGD Jittering: A Training Strategy for Robust and Accurate Model-Based Architectures (2024)
- An Empirical Study on the Effect of Training Data Perturbations on Neural Network Robustness (2024) — link
- A survey of inverse reinforcement learning (2022) — link
- Enhancing Noise Robustness of Retrieval-Augmented Language Models with Adaptive Adversarial Training (2024) — link
- Dynamical Systems Theory and Algorithms for NP-hard Problems (2020) — link
- MFAI: A Scalable Bayesian Matrix Factorization Approach to Leveraging Auxiliary Information (2023) — link
- AuditVotes: A Framework Towards More Deployable Certified Robustness for Graph Neural Networks (2025) — link
- Bridging Data Islands: Geographic Heterogeneity-Aware Federated Learning for Collaborative Remote Sensing Semantic Segmentation (2024) — link
- Dynamic Scheduling for Quality of Information Maximization in Location-aware Opportunistic Mobile Crowdsensing (2023) — link
- Quantum approximate optimization via learning-based adaptive optimization (2023) — link
- A Hybrid Discrete Bacterial Memetic Algorithm with Simulated Annealing for Optimization of the Flow Shop Scheduling Problem (2021) — link
- Hologram Noise Model for Data Augmentation and Deep Learning (2024) — link
- Construction and empirical analysis of data governance system based on knowledge graph (2025) — link
- Retain, Blend, and Exchange: A Quality-Aware Spatial-Stereo Fusion Approach for Event Stream Recognition (2024) — link
- Amortized Variational Inference: A Systematic Review (2023) — link
- Multi-Agent Reinforcement Learning Framework in SDN-IoT for Transient Load Detection and Prevention (2021) — link
- Reinforcement Learning Based Routing in Networks: Review and Classification of Approaches (2018) — link
- From statistical relational to neurosymbolic artificial intelligence: A survey (2024) — link
- A Deep Learning Hybrid Model for Predicting Remaining Capacity of Lithium Ion Batteries (2025) — link
- Loss factorization, weakly supervised learning and label noise robustness (2016)
- Task-Aware Information Routing from Common Representation Space in Lifelong Learning (2023) — link
- DopUS-Net: Quality-Aware Robotic Ultrasound Imaging Based on Doppler Signal (2023) — link
- X-architecture Steiner minimal tree algorithm based on multi-strategy optimization discrete differential evolution (2021) — link
- Deciphering Rumors: A Multi-Task Learning Approach with Intent-aware Hierarchical Contrastive Learning (2023) — link
- Towards Efficient Dialogue Pre-training with Transferable and Interpretable Latent Structure (2021) — link
- Prompting Multi-Modal Image Segmentation with Semantic Grouping (2024) — link
- Robust VAEs via Generating Process of Noise Augmented Data (2024) — link
- A Survey on Transfer Learning for Multiagent Reinforcement Learning Systems (2019) — link
- Efficient routing optimization with discrete penguins search algorithm for MTSP (2023) — link
- FA-SCondDiff: frequency-aware conditional diffusion for generation of low-resolution SPECT bone scintigrams (2025) — link
- Optimization Learning Method for Discrete Process Control (2018) — link
- Light Field Image Quality Assessment Based on Disentangling Bayesian Theory (2023) — link
- Speech Vecalign: an Embedding-based Method for Aligning Parallel Speech Documents (2025) — link
- Can BERT Learn Evidence-Aware Representation for Low Resource Fake News Detection? (2024) — link
- Obfuscation for Privacy-preserving Syntactic Parsing (2019) — link
- Reinforcement learning based resource management for fog computing environment: Literature review, challenges, and open issues (2022) — link
- Creativity and Machine Learning: A Survey (2024) — link
- No Token Left Behind: Reliable KV Cache Compression via Importance-Aware Mixed Precision Quantization (2024) — link
- Alignment Rationale for Natural Language Inference (2020) — link
- Spectrum Sharing in Vehicular Networks Based on Multi-Agent Reinforcement Learning (2019) — link
- Application of an improved LSTM model based on FECA and CEEMDAN VMD decomposition in water quality prediction (2025) — link
- Beyond Accuracy: Rethinking Data Quality as a Strategic Pillar in ERP Implementation (2025) — link
- TopoDiT-3D: Topology-Aware Diffusion Transformer with Bottleneck Structure for 3D Point Cloud Generation (2025) — link
- A Quantitative Review of Automated Neural Search and On-Device Learning for Tiny Devices (2023) — link
- SCSegamba: Lightweight Structure-Aware Vision Mamba for Crack Segmentation in Structures (2025) — link
- Towards understanding quality challenges of the federated learning for neural networks: a first look from the lens of robustness (2022) — link
- On the Shared Transportation Problem: Computational Hardness and Exact Approach (2023) — link
- RobustStegFormer: A Cross-Attention Guided and Noise-Aware Transformer for Image Steganography (2025) — link
- An Overview of Machine Learning, Deep Learning, and Reinforcement Learning-Based Techniques in Quantitative Finance: Recent Progress and Challenges (2023) — link
- The Bi-Objective Shortest Path Network Interdiction Problem: Subgraph Algorithm and Saturation Property (2019) — link
- Drone Deep Reinforcement Learning: A Review (2021) — link
- Investigating Why Contrastive Learning Benefits Robustness Against Label Noise (2022)
- A Frank-Wolfe Based Algorithm for Robust Discrete Optimization under Uncertainty (2020) — link
- Machine Learning-Based Load Balancing Algorithms in Future Heterogeneous Networks: A Survey (2021) — link
- Artifact Region-Aware Transformer: Global Context Helps CT Metal Artifact Reduction (2023) — link
- EFA-YOLO: An Efficient Feature-Aware YOLO Model for Real-Time Driver Fatigue Detection (2025) — link
- A Gentle Introduction to Reinforcement Learning and its Application in Different Fields (2019) — link
- A Survey on Machine Learning Techniques for Routing Optimization in SDN (2020) — link
- Data Manipulation: Towards Effective Instance Learning for Neural Dialogue Generation via Learning to Augment and Reweight (2019) — link
- Robust Lottery Tickets for Pre-trained Language Models (2021) — link
- Differentiable RandAugment: Learning Selecting Weights and Magnitude Distributions of Image Transformations (2022) — link
- A Comprehensive Review of Coverage Path Planning in Robotics Using Classical and Heuristic Algorithms (2020) — link
- Modeling Evolution of Message Interaction for Rumor Resolution (2019) — link
- Quality Not Quantity: On the Interaction between Dataset Design and Robustness of CLIP (2022) — link
- Evidential Temporal-aware Graph-based Social Event Detection via Dempster-Shafer Theory (2022) — link
- Incorporating Hierarchy into Text Encoder: a Contrastive Learning Approach for Hierarchical Text Classification (2021) — link
- Automatically Exposing Problems with Neural Dialog Models (2020) — link
- Deep Semantic Hashing Using Pairwise Labels (2020) — link
- A Luminance-Aware Multi-Scale Network for Polarization Image Fusion with a Multi-Scene Dataset (2025) — link
- Reinforcement Learning for Clinical Decision Support in Critical Care: Comprehensive Review (2020) — link
- Adversarial Self-Attention for Language Understanding (2023) — link
- Improving the Robustness of Summarization Models by Detecting and Removing Input Noise (2022) — link
- Semi-supervised Relation Extraction via Incremental Meta Self-Training (2020) — link
- Improving Empathetic Response Generation by Recognizing Emotion Cause in Conversations (2020) — link
- Graph Embedding with Hierarchical Attentive Membership (2022) — link
- Health-FoTs A Latency Aware Fog based IoT Environment and Efficient Monitoring of Bodys Vital Parameters in Smart Health care Environment. (2024) — link
- Learning Disentangled Representations of Negation and Uncertainty (2021) — link
- Test-Time Self-Adaptive Small Language Models for Question Answering (2023) — link
- A Survey of Beam Management for mmWave and THz Communications Towards 6G (2023) — link
- Learning-Based Energy-Efficient Resource Management by Heterogeneous RF/VLC for Ultra-Reliable Low-Latency Industrial IoT Networks (2019) — link
- Special issue on: Computational discrete optimization (2020) — link
- Transkimmer: Transformer Learns to Layer-wise Skim (2021) — link
- Forward Model and Deep Learning Based Iterative Deconvolution for Robust Dynamic CT Perfusion (2021) — link
- Neural Natural Logic Inference for Interpretable Question Answering (2020) — link
- Wi-Fi Meets ML: A Survey on Improving IEEE 802.11 Performance With Machine Learning (2021) — link
- Dynamic movement primitives in robotics: A tutorial survey (2023) — link
- Sound quality modeling and active control for electric buses based on complete ensemble empirical mode decomposition with adaptive noise (2025) — link
- Neural Data-to-Text Generation with LM-based Text Augmentation (2020) — link
- A Learning-Exploring Method to Generate Diverse Paraphrases with Multi-Objective Deep Reinforcement Learning (2019) — link
- The complexity of conservative valued CSPs (2011) — link
- Style Transfer as Data Augmentation: A Case Study on Named Entity Recognition (2021) — link
- Semantic-Aware Sensing Information Transmission for Metaverse: A Contest Theoretic Approach (2022) — link
- Step by Step Loss Goes Very Far: Multi-Step Quantization for Adversarial Text Attacks (2022) — link
- Self-Supervised Learning of Neural Speech Representations From Unlabeled Intracranial Signals (2021) — link
- Signal Quality Assessment and Reconstruction of PPG-Derived Signals for Heart Rate and Variability Estimation in In-Vehicle Applications: A Comparative Review and Empirical Validation (2025) — link
- Backpropagating through Structured Argmax using a SPIGOT (2017) — link
- Improving data quality with label noise correction (2019) — link
- Reliability-based Dynamic Network Design with Stochastic Networks (2009) — link
- WaveY-Net: physics-augmented deep-learning for high-speed electromagnetic simulation and optimization (2021) — link
- Evolutionary Hybrid Particle Swarm Optimization Algorithm for Solving NP-Hard No-Wait Flow Shop Scheduling Problems (2017) — link
- SHIELD: Defending Textual Neural Networks against Multiple Black-Box Adversarial Attacks with Stochastic Multi-Expert Patcher (2021) — link
- Noisy intermediate-scale quantum algorithms (2022) — link
- Adversarial Machine Learning in Text Processing: A Literature Survey (2021) — link
- Contrastive Representation Learning: A Framework and Review (2019) — link
- A WAV2VEC2-Based Experimental Study on Self-Supervised Learning Methods to Improve Child Speech Recognition (2022) — link
- Artificial Intelligence for UAV-Enabled Wireless Networks: A Survey (2020) — link
- A Survey of Generative Adversarial Networks for Synthesizing Structured Electronic Health Records (2023) — link
- A Systematic Review on Password Guessing Tasks (2023) — link
- Draining the Water Hole: Mitigating Social Engineering Attacks with CyberTWEAK (2020) — link
- Pre-training Enhanced Spatial-temporal Graph Neural Network for Multivariate Time Series Forecasting (2022) — link
- Gradient boosting with extreme-value theory for wildfire prediction (2023) — link
- Research on the health status evaluation method of rolling bearing based on EMDGABP (2023) — link
- Explainable AI Over the Internet of Things (IoT): Overview, State-of-the-Art and Future Directions (2021) — link
- EBERT: Efficient BERT Inference with Dynamic Structured Pruning (2020) — link
- Application of Deep Learning on Single-Cell RNA Sequencing Data Analysis: A Review (2022) — link
- Improving Neural Machine Translation by Achieving Knowledge Transfer with Sentence Alignment Learning (2018) — link
- Publish or Drop Traffic Event Alerts? Quality-aware Decision Making in Participatory Sensing-based Vehicular CPS (2019) — link
- Computational complexity of the quantum separability problem (2006) — link
- A Survey of Multi-Objective Sequential Decision-Making (2013) — link
- Spatial Effects of Video Compression on Classification in Convolutional Neural Networks (2018) — link
- Unsupervised Parsing with S-DIORA: Single Tree Encoding for Deep Inside-Outside Recursive Autoencoders (2019) — link
- A comprehensive survey on machine learning for networking: evolution, applications and research opportunities (2018) — link
- DQELR: An Adaptive Deep Q-Network-Based Energy- and Latency-Aware Routing Protocol Design for Underwater Acoustic Sensor Networks (2018) — link
- Judge the Judges: A Large-Scale Evaluation Study of Neural Language Models for Online Review Generation (2018) — link
- Edge Intelligence: Paving the Last Mile of Artificial Intelligence With Edge Computing (2019) — link
- Machine Learning for 5G/B5G Mobile and Wireless Communications: Potential, Limitations, and Future Directions (2018) — link
- Neural packet classification (2019) — link
- On the Robustness of Causal Discovery with Additive Noise Models on Discrete Data (2020) — link
- An Overview on Application of Machine Learning Techniques in Optical Networks (2018) — link
- Tackling Faults in the Industry 4.0 EraA Survey of Machine-Learning Solutions and Key Aspects (2019) — link
- Deep Learning for Low-Field to High-Field MR: Image Quality Transfer with Probabilistic Decimation Simulator (2019) — link
- Evolutionarily Learning Multi-Aspect Interactions and Influences from Network Structure and Node Content (2019) — link
- Modeling IoT Equipment With Graph Neural Networks (2018) — link
- An Overview of Artificial Intelligence Applications for Power Electronics (2020) — link
- Variable Impedance Control and LearningA Review (2019) — link
- On the use of BERT for Neural Machine Translation (2019) — link
- Multiagent Learning: Basics, Challenges, and Prospects (2012) — link
- Machine Speech Chain (2019) — link
- AI-Assisted Network-Slicing Based Next-Generation Wireless Networks (2019) — link
- Analyzing Multi-Head Self-Attention: Specialized Heads Do the Heavy Lifting, the Rest Can Be Pruned (2018) — link
- Outlier Detection for Improved Data Quality and Diversity in Dialog Systems (2019) — link
- Data quality in empirical software engineering: a targeted review (2013) — link
- A Survey on Machine-Learning Techniques for UAV-Based Communications (2019) — link
- Spatio-Temporal Vessel Trajectory Smoothing Using Empirical Mode Decomposition and Wavelet Transform (2019) — link
- Visual Exploration of Air Quality Data with a Time-correlation-partitioning Tree Based on Information Theory (2019) — link
- Environmental Noise Robustness for Korean Fricatives Using Speech Enhancement Generative Adversarial Networks (2019) — link
- Adaptive enhancement of optical fringe patterns by selective reconstruction using FABEMD algorithm and Hilbert spiral transform. (2012) — link
- MetaOmics-10T: The Foundational Dataset to Unlock Causal Modeling of Microbial Ecosystems (2025)
- Steering the Evolutionary Game: Hierarchical Control of Therapeutic Resistance in Cancer Treatment (2025)
0 of 537 cited works are in the corpus; resolved via arXiv source bundles, Semantic Scholar and OpenAlex. Corpus-wide: 2518 linked papers.